Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with F-ARA-EdU
Pernot, L., Neef, A.B., Westermaier, Y., Perozzo, R., Luedtke, N., Scapozza, L.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Thymidine kinase | 332 | Human alphaherpesvirus 1 strain 17 | Mutation(s): 0  Gene Names: TK, TK (UL23), UL23 EC: 2.7.1.21 | ||
UniProt | |||||
Find proteins for P0DTH5 (Human herpesvirus 1 (strain 17)) Explore P0DTH5  Go to UniProtKB:  P0DTH5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DTH5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FDU Query on FDU | C [auth A], H [auth B] | 1-(2-deoxy-2-fluoro-beta-D-arabinofuranosyl)-5-ethynylpyrimidine-2,4(1H,3H)-dione C11 H11 F N2 O5 YEEGMPUOCRQFRV-IBCQBUCCSA-N | |||
SO4 Query on SO4 | D [auth A] E [auth A] F [auth A] G [auth A] I [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Length ( Å ) | Angle ( ˚ ) |
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a = 113.44 | α = 90 |
b = 115.31 | β = 90 |
c = 107.9 | γ = 90 |
Software Name | Purpose |
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PHASER | phasing |
PHENIX | refinement |
MOSFLM | data reduction |
SCALA | data scaling |