1UFR

Crystal Structure of TT1027 from Thermus thermophilus HB8

• PDB DOI: https://doi.org/10.2210/pdb1UFR/pdb

• Classification: RNA BINDING PROTEIN
• Organism(s): Thermus thermophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2003-06-08 Released: 2003-12-08 
• Deposition Author(s): Matsuura, T., Sakai, H., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.287 
• R-Value Work: 0.264 
• R-Value Observed: 0.264 

Starting Model: experimental

Literature

Crystal Structure of TT1027 from Thermus thermophilus HB8

Matsuura, T., Sakai, H., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 82.7 kDa 
• Atom Count: 5,375 
• Modelled Residue Count: 666 
• Deposited Residue Count: 724 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
pyr mRNA-binding attenuation protein	A, B, C, D	181	Thermus thermophilus	Mutation(s): 0  EC: 2.4.2.9
UniProt
Find proteins for Q5SK65 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SK65  Go to UniProtKB:  Q5SK65

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	E [auth A], F [auth B], G [auth C], H [auth D]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B, C, D	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.287 
• R-Value Work: 0.264 
• R-Value Observed: 0.264 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.31	α = 90
b = 114.136	β = 90
c = 146.19	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-12-08 
Deposition Author(s): Matsuura, T., Sakai, H., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2003-12-08
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Derived calculations, Refinement description
• Version 1.4: 2023-11-15
  Changes: Data collection