8VU8

Wheat Germ Agglutinin (WGA) domain D


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Decoding the mechanism governing the structural stability of wheat germ agglutinin and its isolated domains: A combined calorimetric, NMR, and MD simulation study.

Medrano-Cerano, J.L.Cofas-Vargas, L.F.Leyva, E.Rauda-Ceja, J.A.Calderon-Vargas, M.Cano-Sanchez, P.Titaux-Delgado, G.Melchor-Meneses, C.M.Hernandez-Arana, A.Del Rio-Portilla, F.Garcia-Hernandez, E.

(2024) Protein Sci 33: e5020-e5020

  • DOI: https://doi.org/10.1002/pro.5020
  • Primary Citation of Related Structures:  
    8VU6, 8VU7, 8VU8

  • PubMed Abstract: 

    Wheat germ agglutinin (WGA) demonstrates potential as an oral delivery agent owing to its selective binding to carbohydrates and its capacity to traverse biological membranes. In this study, we employed differential scanning calorimetry and molecular dynamics simulations to comprehensively characterize the thermal unfolding process of both the complete lectin and its four isolated domains. Furthermore, we present the nuclear magnetic resonance structures of three domains that were previously lacking experimental structures in their isolated forms. Our results provide a collective understanding of the energetic and structural factors governing the intricate unfolding mechanism of the complete agglutinin, shedding light on the specific role played by each domain in this process. The analysis revealed negligible interdomain cooperativity, highlighting instead significant coupling between dimer dissociation and the unfolding of the more labile domains. By comparing the dominant interactions, we rationalized the stability differences among the domains. Understanding the structural stability of WGA opens avenues for enhanced drug delivery strategies, underscoring its potential as a promising carrier throughout the gastrointestinal environment.


  • Organizational Affiliation

    Universidad Nacional Autónoma de México, Instituto de Química, Ciudad Universitaria, Ciudad de México, Mexico.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Agglutinin isolectin 343Triticum aestivumMutation(s): 0 
UniProt
Find proteins for P10969 (Triticum aestivum)
Explore P10969 
Go to UniProtKB:  P10969
Entity Groups  
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UniProt GroupP10969
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica (PAPIIT)MexicoIN206221

Revision History  (Full details and data files)

  • Version 1.0: 2024-06-05
    Type: Initial release