8VOI

HADDOCK models of active human alphaM I-domain bound to the the C-terminal domain of the cytokine pleiotrophin

• PDB DOI: https://doi.org/10.2210/pdb8VOI/pdb
• BMRB: 31139

• Classification: CELL ADHESION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2024-01-15 Released: 2024-05-15 
• Deposition Author(s): Wang, X., Nguyen, H.
• Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: target function 

Literature

NMR structure of alphaM I-domain of integrin Mac-1 in complex with the Cytokine Pleiotrophin

Wang, X., Nguyen, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: NMR Distance Restraints

Macromolecule Content

• Total Structure Weight: 27.64 kDa 
• Atom Count: 1,942 
• Modelled Residue Count: 241 
• Deposited Residue Count: 241 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Integrin alpha-M	A	184	Homo sapiens	Mutation(s): 0  Gene Names: ITGAM, CD11B, CR3A
UniProt & NIH Common Fund Data Resources
Find proteins for P11215 (Homo sapiens) Explore P11215  Go to UniProtKB:  P11215
PHAROS:  P11215 GTEx:  ENSG00000169896

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Pleiotrophin	B	57	Homo sapiens	Mutation(s): 0  Gene Names: PTN, HBNF1, NEGF1
UniProt & NIH Common Fund Data Resources
Find proteins for P21246 (Homo sapiens) Explore P21246  Go to UniProtKB:  P21246
PHAROS:  P21246 GTEx:  ENSG00000105894

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG (Subject of Investigation/LOI)	C [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 200 
• Conformers Submitted: 10 
• Selection Criteria: target function 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-05-15 
Deposition Author(s): Wang, X., Nguyen, H.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM118518
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)	United States	HL063199

Revision History  

• Version 1.0: 2024-05-15
  Type: Initial release