8PXS

Short RNA binding to peptide amyloids


Experimental Data Snapshot

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 4000 
  • Conformers Submitted: 10 
  • Selection Criteria: target function 

wwPDB Validation   3D Report Full Report


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Literature

An Analysis of Nucleotide-Amyloid Interactions Reveals Selective Binding to Codon-Sized RNA.

Rout, S.K.Cadalbert, R.Schroder, N.Wang, J.Zehnder, J.Gampp, O.Wiegand, T.Guntert, P.Klingler, D.Kreutz, C.Knorlein, A.Hall, J.Greenwald, J.Riek, R.

(2023) J Am Chem Soc 145: 21915-21924

  • DOI: https://doi.org/10.1021/jacs.3c06287
  • Primary Citation of Related Structures:  
    8PXS

  • PubMed Abstract: 

    Interactions between RNA and proteins are the cornerstone of many important biological processes from transcription and translation to gene regulation, yet little is known about the ancient origin of said interactions. We hypothesized that peptide amyloids played a role in the origin of life and that their repetitive structure lends itself to building interfaces with other polymers through avidity. Here, we report that short RNA with a minimum length of three nucleotides binds in a sequence-dependent manner to peptide amyloids. The 3'-5' linked RNA backbone appears to be well-suited to support these interactions, with the phosphodiester backbone and nucleobases both contributing to the affinity. Sequence-specific RNA-peptide interactions of the kind identified here may provide a path to understanding one of the great mysteries rooted in the origin of life: the origin of the genetic code.


  • Organizational Affiliation

    Institute of Molecular Physical Science, ETH Zürich, 8093 Zürich, Switzerland.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE9Escherichia coliMutation(s): 0 
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (5'-R(P*GP*UP*CP*A)-3')D [auth R]4Escherichia coli
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLID-STATE NMR
  • Conformers Calculated: 4000 
  • Conformers Submitted: 10 
  • Selection Criteria: target function 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-18
    Type: Initial release