8OYD

TrkB transmembrane domain NMR structure in DMPC/DHPC bicelles

PDB DOI: https://doi.org/10.2210/pdb8OYD/pdb
BMRB: 34814

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2023-05-04 Released: 2024-05-15
Deposition Author(s): Kot, E.F., Mineev, K.S., Goncharuk, S.A.
Funding Organization(s): Russian Science Foundation

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural Basis for the transmembrane signaling and antidepressant-induced activation of the receptor tyrosine kinase TrkB

Kot, E.F., Mineev, K.S., Goncharuk, S.A., Vilar, M., Franco, M.L., Benito-Martinez, A.

To be published.

Macromolecule Content

Total Structure Weight: 9.95 kDa
Atom Count: 692
Modelled Residue Count: 90
Deposited Residue Count: 90
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
BDNF/NT-3 growth factors receptor	A, B	45	Homo sapiens	Mutation(s): 0 Gene Names: NTRK2, TRKB EC: 2.7.10.1 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q16620 (Homo sapiens) Explore Q16620 Go to UniProtKB: Q16620
PHAROS: Q16620 GTEx: ENSG00000148053
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q16620
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 10
Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-05-15

Deposition Author(s):

Goncharuk, S.A.

Funding Organization	Location	Grant Number
Russian Science Foundation	Russian Federation	22-14-00130

Revision History (Full details and data files)

Version 1.0: 2024-05-15
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.