PRD_002589

methyl 2'-fluoro-N-acetyllactosaminide

Created:	2025-01-30
Last modified:	2026-05-06

PRD_002589 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 9I4O.

Find Related PDB Entries
2 entries where PRD_002589 is present

Chemical Details
Formal Charge	0
Atom Count	53
Chiral Atom Count	10
Bond Count	54
Aromatic Bond Count	0

2D diagram of PRD_002589

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	methyl 2'-fluoro-N-acetyllactosaminide
Systematic Name (OpenEye OEToolkits)	~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-5-[(2~{S},3~{R},4~{S},5~{R},6~{R})-3-fluoranyl-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-(hydroxymethyl)-2-methoxy-4-oxidanyl-oxan-3-yl]ethanamide
Formula	C₁₅ H₂₆ F N O₁₀
Molecular Weight	399.366
Type	SACCHARIDE

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	CACTVS	3.385	CO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2F)[CH](O)[CH]1NC(C)=O
SMILES	OpenEye OEToolkits	2.0.7	CC(=O)NC1C(C(C(OC1OC)CO)OC2C(C(C(C(O2)CO)O)O)F)O
Canonical SMILES	CACTVS	3.385	CO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2F)[C@H](O)[C@H]1NC(C)=O
Canonical SMILES	OpenEye OEToolkits	2.0.7	CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)F)O

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.