PRD_002559

Stapled peptide

Created:	2024-02-27
Last modified:	2024-03-06

PRD_002559 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 6Q38.

Find Related PDB Entries
1 entry where PRD_002559 is present

Chemical Details
Formal Charge	0
Atom Count	223
Chiral Atom Count	8
Bond Count	229
Aromatic Bond Count	33

2D diagram of PRD_002559

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	Stapled peptide
Formula	C₇₅ H₁₀₅ N₂₆ O₁₇
Molecular Weight	1,642.8
Type	PEPTIDE-LIKE

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	CACTVS	3.385	CC[CH](C)[CH]1NC(=O)[CH](CCCC[NH3+])NC(=O)[CH](Cc2ccccc2)NC(=O)CNC(=O)[CH](Cc3ccc(O)cc3)NC(=O)[CH](CC(C)C)NC(=O)[CH](CCCNC(N)=[NH2+])NC(=O)[CH](Cn4cc(nn4)c5cc(cc(c5)c6cn(C[CH](NC(=O)[CH](Cc7c[nH]c[nH+]7)NC1=O)C(=O)NCC(=O)NCC(N)=O)nn6)C(O)=O)NC(=O)CNC(C)=O
SMILES	OpenEye OEToolkits	2.0.7	CCC(C)C1C(=O)NC(C(=O)NC(Cn2cc(nn2)-c3cc(cc(c3)C(=O)O)-c4cn(nn4)CC(C(=O)NC(C(=O)NC(C(=O)NC(C(=O)NCC(=O)NC(C(=O)NC(C(=O)N1)CCCC[NH3+])Cc5ccccc5)Cc6ccc(cc6)O)CC(C)C)CCCNC(=[NH2+])N)NC(=O)CNC(=O)C)C(=O)NCC(=O)NCC(=O)N)Cc7c[nH]c[nH+]7
Canonical SMILES	CACTVS	3.385	CC[C@H](C)[C@@H]1NC(=O)[C@H](CCCC[NH3+])NC(=O)[C@H](Cc2ccccc2)NC(=O)CNC(=O)[C@H](Cc3ccc(O)cc3)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCNC(N)=[NH2+])NC(=O)[C@H](Cn4cc(nn4)c5cc(cc(c5)c6cn(C[C@H](NC(=O)[C@H](Cc7c[nH]c[nH+]7)NC1=O)C(=O)NCC(=O)NCC(N)=O)nn6)C(O)=O)NC(=O)CNC(C)=O
Canonical SMILES	OpenEye OEToolkits	2.0.7	CC[C@H](C)[C@H]1C(=O)N[C@H](C(=O)NC(Cn2cc(nn2)-c3cc(cc(c3)C(=O)O)-c4cn(nn4)CC(C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)NCC(=O)N[C@H](C(=O)N[C@H](C(=O)N1)CCCC[NH3+])Cc5ccccc5)Cc6ccc(cc6)O)CC(C)C)CCCNC(=[NH2+])N)NC(=O)CNC(=O)C)C(=O)NCC(=O)NCC(=O)N)Cc7c[nH]c[nH+]7

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.