PRD_002424

Darobactin 22

Created:2022-08-09
Last modified:  2023-01-11

PRD_002424 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 8ADG.

Chemical Details
Formal Charge0
Atom Count146
Chiral Atom Count9
Bond Count153
Aromatic Bond Count30
2D diagram of PRD_002424
Toggle HydrogenToggle Labels
Chemical Component Summary
NameDarobactin 22
Systematic Name (OpenEye OEToolkits)3-[(5~{R},17~{R},20~{R},23~{S},26~{S},29~{S})-29-[[(2~{R})-5-[[azaniumylidene(azanyl)methyl]amino]-1-[[(2~{S})-3-(1~{H}-indol-3-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamoyl]-17-azanyl-20-(2-azanyl-2-oxidanylidene-ethyl)-26-[(1~{S})-1-oxidanylethyl]-18,21,24,27-tetrakis(oxidanylidene)-6-oxa-2,13,19,22,25,28-hexazahexacyclo[29.3.1.0^{4,34}.0^{5,23}.0^{7,12}.0^{11,15}]pentatriaconta-1(35),3,7,9,11,14,31,33-octaen-30-yl]propylazanium
FormulaC53 H67 N15 O11
Molecular Weight1,090.193
TypePEPTIDE-LIKE
Chemical Descriptors
TypeProgramVersionDescriptor
SMILESCACTVS3.385C[CH](O)[CH]1NC(=O)[CH]2NC(=O)[CH](CC(N)=O)NC(=O)[CH](N)Cc3c[nH]c4c(O[CH]2c5c[nH]c6cc(ccc56)[CH](CCC[NH3+])[CH](NC1=O)C(=O)N[CH](CCCNC(N)=[NH2+])C(=O)N[CH](Cc7c[nH]c8ccccc78)C(O)=O)cccc34
SMILESOpenEye OEToolkits2.0.7CC(C1C(=O)NC(C(c2ccc3c(c2)[nH]cc3C4C(C(=O)N1)NC(=O)C(NC(=O)C(Cc5c[nH]c6c5cccc6O4)N)CC(=O)N)CCC[NH3+])C(=O)NC(CCCNC(=[NH2+])N)C(=O)NC(Cc7c[nH]c8c7cccc8)C(=O)O)O
Canonical SMILESCACTVS3.385 C[C@H](O)[C@@H]1NC(=O)[C@H]2NC(=O)[C@@H](CC(N)=O)NC(=O)[C@H](N)Cc3c[nH]c4c(O[C@@H]2c5c[nH]c6cc(ccc56)[C@@H](CCC[NH3+])[C@H](NC1=O)C(=O)N[C@H](CCCNC(N)=[NH2+])C(=O)N[C@@H](Cc7c[nH]c8ccccc78)C(O)=O)cccc34
Canonical SMILESOpenEye OEToolkits2.0.7 C[C@@H]([C@H]1C(=O)N[C@@H](C(c2ccc3c(c2)[nH]cc3[C@@H]4[C@@H](C(=O)N1)NC(=O)[C@H](NC(=O)[C@@H](Cc5c[nH]c6c5cccc6O4)N)CC(=O)N)CCC[NH3+])C(=O)N[C@H](CCCNC(=[NH2+])N)C(=O)N[C@@H](Cc7c[nH]c8c7cccc8)C(=O)O)O
InChIInChI1.06 InChI=1S/C53H65N15O11/c1-24(69)41-49(74)67-43(50(75)63-35(11-6-16-59-53(57)58)47(72)65-38(52(77)78)19-27-21-60-34-10-3-2-7-28(27)34)29(9-5-15-54)25-13-14-31-32(23-61-36(31)18-25)45-44(51(76)66-41)68-48(73)37(20-40(56)70)64-46(71)33(55)17-26-22-62-42-30(26)8-4-12-39(42)79-45/h2-4,7-8,10,12-14,18,21-24,29,33,35,37-38,41,43-45,60-62,69H,5-6,9,11,15-17,19-20,54-55H2,1H3,(H2,56,70)(H,63,75)(H,64,71)(H,65,72)(H,66,76)(H,67,74)(H,68,73)(H,77,78)(H4,57,58,59)/p+2/t24-,29+,33+,35+,37+,38-,41-,43-,44-,45+/m0/s1
InChIKeyInChI1.06 VGHHVOGSGVMNKK-BTPZIDHDSA-P