PRD_002399

Macrocycle NDM1i-3D

Created:2020-06-09
Last modified:  2025-02-04

PRD_002399 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 6XCI.

Chemical Details
Formal Charge0
Atom Count135
Chiral Atom Count9
Bond Count139
Aromatic Bond Count6
2D diagram of PRD_002399
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Chemical Component Summary
NameMacrocycle NDM1i-3D
FormulaC45 H68 N10 O11 S
Molecular Weight957.147
TypePEPTIDE-LIKE
Chemical Descriptors
TypeProgramVersionDescriptor
SMILESCACTVS3.385CCCC[CH]1NC(=O)[CH](CCCCN)NC(=O)[CH]2CCCN2C(=O)[CH](CCC(O)=O)NC(=O)[CH]3C[CH](O)CN3C(=O)[CH](Cc4ccccc4CN)NC(=O)[CH]5CCCN5C(=O)[CH](CS)NC1=O
SMILESOpenEye OEToolkits2.0.7CCCCC1C(=O)NC(C(=O)N2CCCC2C(=O)NC(C(=O)N3CC(CC3C(=O)NC(C(=O)N4CCCC4C(=O)NC(C(=O)N1)CCCCN)CCC(=O)O)O)Cc5ccccc5CN)CS
Canonical SMILESCACTVS3.385 CCCC[C@@H]1NC(=O)[C@@H](CCCCN)NC(=O)[C@H]2CCCN2C(=O)[C@H](CCC(O)=O)NC(=O)[C@@H]3C[C@@H](O)CN3C(=O)[C@H](Cc4ccccc4CN)NC(=O)[C@@H]5CCCN5C(=O)[C@@H](CS)NC1=O
Canonical SMILESOpenEye OEToolkits2.0.7 CCCC[C@H]1C(=O)N[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@H](C(=O)N3C[C@@H](C[C@H]3C(=O)N[C@H](C(=O)N4CCC[C@@H]4C(=O)N[C@@H](C(=O)N1)CCCCN)CCC(=O)O)O)Cc5ccccc5CN)CS
InChIInChI1.06 InChI=1S/C45H68N10O11S/c1-2-3-12-29-39(60)52-33(25-67)45(66)54-20-9-15-35(54)41(62)51-32(21-26-10-4-5-11-27(26)23-47)44(65)55-24-28(56)22-36(55)42(63)50-31(16-17-37(57)58)43(64)53-19-8-14-34(53)40(61)49-30(38(59)48-29)13-6-7-18-46/h4-5,10-11,28-36,56,67H,2-3,6-9,12-25,46-47H2,1H3,(H,48,59)(H,49,61)(H,50,63)(H,51,62)(H,52,60)(H,57,58)/t28-,29+,30-,31+,32+,33-,34-,35+,36+/m1/s1
InChIKeyInChI1.06 DLSVEFWZIJIQNU-VXMZCOAMSA-N

Related Resource References

Resource NameReference
PubChem 155819218