PRD_002268

Lipid II

Created:2020-06-04
Last modified:  2023-06-11

PRD_002268 is described in the Biologically Interesting Molecule Reference Dictionary (BIRD).

The representative PDB ID is 6YFY.

Chemical Details
Formal Charge0
Atom Count181
Chiral Atom Count16
Bond Count182
Aromatic Bond Count0
2D diagram of PRD_002268
Toggle HydrogenToggle Labels
Chemical Component Summary
NameLipid II
Systematic Name (OpenEye OEToolkits)[(5~{S})-5-[[(4~{R})-4-[[(2~{S})-2-[2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-5-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-[[[bis(oxidanidyl)-[[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]-$l^{3}-oxidanylidene]-$l^{5}-phosphanyl]-$l^{3}-oxidanylidene]-bis(oxidanidyl)-$l^{5}-phosphanyl]oxy-6-(hydroxymethyl)oxan-4-yl]oxypropanoylamino]propanoyl]amino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-6-oxidanylidene-6-[[(2~{R})-1-oxidanylidene-1-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]propan-2-yl]amino]hexyl]azanium
FormulaC54 H91 N8 O26 P2
Molecular Weight1,330.286
TypePEPTIDE-LIKE
Chemical Descriptors
TypeProgramVersionDescriptor
SMILESCACTVS3.385C[CH](NC(=O)[CH](C)NC(=O)[CH](CCCC[NH3+])NC(=O)CC[CH](NC(=O)[CH](C)NC(=O)[CH](C)O[CH]1[CH](NC(C)=O)[CH](O[CH](CO)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2NC(C)=O)O[P]([O-])([O-])=[O][P]([O-])([O-])=[O]CC=C(C)CCC=C(C)CCC=C(C)C)C(O)=O)C(O)=O
SMILESOpenEye OEToolkits2.0.7CC(C(=O)NC(CCC(=O)NC(CCCC[NH3+])C(=O)NC(C)C(=O)NC(C)C(=O)O)C(=O)O)NC(=O)C(C)OC1C(C(OC(C1OC2C(C(C(C(O2)CO)O)O)NC(=O)C)CO)OP(=OP(=OCC=C(C)CCC=C(C)CCC=C(C)C)([O-])[O-])([O-])[O-])NC(=O)C
Canonical SMILESCACTVS3.385 C[C@@H](NC(=O)[C@@H](C)NC(=O)[C@H](CCCC[NH3+])NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H](C)O[C@@H]1[C@@H](NC(C)=O)[C@H](O[C@H](CO)[C@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)O[P]([O-])([O-])=[O][P]([O-])([O-])=[O]C/C=C(C)/CC/C=C(C)/CCC=C(C)C)C(O)=O)C(O)=O
Canonical SMILESOpenEye OEToolkits2.0.7 C[C@H](C(=O)N[C@H](C)C(=O)O)NC(=O)[C@H](CCCC[NH3+])NC(=O)CC[C@H](C(=O)O)NC(=O)[C@H](C)NC(=O)C(C)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)NC(=O)C)CO)OP(=OP(=OC/C=C(\C)/CC/C=C(\C)/CCC=C(C)C)([O-])[O-])([O-])[O-])NC(=O)C
InChIInChI1.06 InChI=1S/C54H90N8O26P2/c1-27(2)15-13-16-28(3)17-14-18-29(4)22-24-82-89(78,79)88-90(80,81)87-54-42(60-35(10)66)46(45(39(26-64)85-54)86-53-41(59-34(9)65)44(69)43(68)38(25-63)84-53)83-33(8)49(72)56-31(6)48(71)62-37(52(76)77)20-21-40(67)61-36(19-11-12-23-55)50(73)57-30(5)47(70)58-32(7)51(74)75/h15,17,22,30-33,36-39,41-46,53-54,63-64,68-69H,11-14,16,18-21,23-26,55H2,1-10H3,(H9-4,56,57,58,59,60,61,62,65,66,67,70,71,72,73,74,75,76,77,78,79,80,81)/q-4/p+1/b28-17+,29-22+/t30-,31+,32-,33-,36+,37-,38-,39-,41-,42-,43-,44-,45-,46-,53+,54-/m1/s1
InChIKeyInChI1.06 FXVQKVNQHLOTIP-UTOAJUMUSA-O