RCSB PDB - CBR Ligand Summary Page

CBR

5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE

Created:2003-07-16
Last modified:  2011-06-04

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Chemical Details

Formal Charge0
Atom Count34
Chiral Atom Count3
Bond Count35
Aromatic Bond Count0
2D diagram of CBR

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Chemical Component Summary

Name5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Systematic Name (OpenEye OEToolkits)[(2R,3S,5R)-5-(4-amino-5-bromo-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
FormulaC9 H13 Br N3 O7 P
Molecular Weight386.093
TypeDNA LINKING

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs10.04BrC=1C(=NC(=O)N(C=1)C2OC(C(O)C2)COP(=O)(O)O)N
SMILESCACTVS3.341NC1=NC(=O)N(C=C1Br)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
SMILESOpenEye OEToolkits1.5.0C1C(C(OC1N2C=C(C(=NC2=O)N)Br)COP(=O)(O)O)O
Canonical SMILESCACTVS3.341 NC1=NC(=O)N(C=C1Br)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
Canonical SMILESOpenEye OEToolkits1.5.0 C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)Br)COP(=O)(O)O)O
InChIInChI1.03 InChI=1S/C9H13BrN3O7P/c10-4-2-13(9(15)12-8(4)11)7-1-5(14)6(20-7)3-19-21(16,17)18/h2,5-7,14H,1,3H2,(H2,11,12,15)(H2,16,17,18)/t5-,6+,7+/m0/s1
InChIKeyInChI1.03 PLDRCXOBLRYJSZ-RRKCRQDMSA-N

Related Resource References

Resource NameReference
PubChem 15331965