A1DNT

4-{[(3S)-thiolan-3-yl]oxy}-6,7-dihydro-5H-cyclopenta[d]pyrimidine

Created:	2026-07-23
Last modified:	2026-08-05

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1 entries where A1DNT is found as a standalone ligand

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Chemical Details
Formal Charge	0
Atom Count	29
Chiral Atom Count	1
Bond Count	31
Aromatic Bond Count	6

2D diagram of A1DNT

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Chemical Component Summary
Name	4-{[(3S)-thiolan-3-yl]oxy}-6,7-dihydro-5H-cyclopenta[d]pyrimidine
Systematic Name (OpenEye OEToolkits)	4-[(3~{S})-thiolan-3-yl]oxy-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidine
Formula	C₁₁ H₁₄ N₂ O S
Molecular Weight	222.307
Type	NON-POLYMER

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	14.52	c1nc(OC2CCSC2)c2CCCc2n1
SMILES	CACTVS	3.385	C1Cc2ncnc(O[CH]3CCSC3)c2C1
SMILES	OpenEye OEToolkits	3.1.0.0	c1nc2c(c(n1)OC3CCSC3)CCC2
Canonical SMILES	CACTVS	3.385	C1Cc2ncnc(O[C@H]3CCSC3)c2C1
Canonical SMILES	OpenEye OEToolkits	3.1.0.0	c1nc2c(c(n1)O[C@H]3CCSC3)CCC2
InChI	InChI	1.06	InChI=1S/C11H14N2OS/c1-2-9-10(3-1)12-7-13-11(9)14-8-4-5-15-6-8/h7-8H,1-6H2/t8-/m0/s1
InChIKey	InChI	1.06	FNOFNORQXKTCFO-QMMMGPOBSA-N

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.