GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 8GZV designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
8GZV_GDP_A_401 | 77% | 42% | 0.107 | 0.945 | 0.91 | 1.33 | 1 | 4 | 1 | 0 | 100% | 1 |
6LL5_GDP_A_401 | 91% | 40% | 0.075 | 0.961 | 0.97 | 1.37 | 1 | 3 | 0 | 0 | 100% | 1 |
8GZX_GDP_A_401 | 86% | 47% | 0.09 | 0.959 | 1 | 1.05 | 1 | 4 | 0 | 0 | 100% | 1 |
6LL6_GDP_A_401 | 79% | 45% | 0.119 | 0.965 | 0.9 | 1.2 | 1 | 3 | 0 | 0 | 100% | 1 |
8GZW_GDP_C_401 | 76% | 43% | 0.135 | 0.973 | 0.93 | 1.26 | - | 2 | 0 | 0 | 100% | 1 |
8GZY_GDP_E_401 | 72% | 41% | 0.145 | 0.968 | 0.97 | 1.33 | - | 5 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
2PHN_GDP_A_2696 | 100% | 44% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |