GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 8DB5 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
8DB5_GDP_C_201 | 96% | 41% | 0.069 | 0.977 | 1.14 | 1.15 | 2 | 3 | 0 | 0 | 100% | 1 |
8DB5_GDP_G_201 | 95% | 46% | 0.07 | 0.976 | 1.13 | 0.96 | 3 | 1 | 0 | 0 | 100% | 1 |
8DB5_GDP_E_201 | 94% | 37% | 0.076 | 0.977 | 1.11 | 1.37 | 1 | 5 | 0 | 0 | 100% | 1 |
8DB5_GDP_E_202 | 91% | 38% | 0.081 | 0.967 | 1.17 | 1.27 | 2 | 4 | 0 | 0 | 100% | 1 |
8DB5_GDP_A_201 | 90% | 40% | 0.087 | 0.971 | 1.03 | 1.31 | 1 | 5 | 0 | 0 | 100% | 1 |
8DB5_GDP_D_201 | 89% | 45% | 0.083 | 0.963 | 0.9 | 1.22 | 1 | 2 | 0 | 0 | 100% | 1 |
8DB5_GDP_B_201 | 84% | 40% | 0.095 | 0.957 | 0.94 | 1.38 | 2 | 4 | 1 | 0 | 100% | 1 |
8DB5_GDP_H_201 | 83% | 42% | 0.095 | 0.953 | 1.06 | 1.18 | 2 | 3 | 0 | 0 | 100% | 1 |
8DCO_GDP_B_201 | 96% | 43% | 0.064 | 0.975 | 0.98 | 1.21 | 2 | 3 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
2PHN_GDP_A_2696 | 100% | 44% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |