UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 8CM9 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
8CM9_UDP_C_1101 | 64% | 31% | 0.176 | 0.976 | 1.12 | 1.63 | 2 | 8 | 1 | 0 | 100% | 1 |
8CM9_UDP_D_1101 | 63% | 34% | 0.171 | 0.969 | 1.24 | 1.37 | 2 | 5 | 0 | 0 | 100% | 1 |
8CM9_UDP_B_1101 | 63% | 34% | 0.185 | 0.981 | 1.2 | 1.41 | 3 | 6 | 1 | 0 | 100% | 1 |
8CM9_UDP_A_1101 | 62% | 32% | 0.187 | 0.979 | 1.27 | 1.44 | 3 | 8 | 1 | 0 | 100% | 1 |
4N39_UDP_A_1201 | 96% | 37% | 0.08 | 0.987 | 0.91 | 1.53 | - | 5 | 0 | 0 | 100% | 1 |
3PE4_UDP_A_1212 | 94% | 36% | 0.079 | 0.976 | 1.03 | 1.49 | 2 | 4 | 0 | 0 | 100% | 1 |
5LWV_UDP_A_1201 | 93% | 27% | 0.088 | 0.983 | 1.04 | 1.87 | 2 | 11 | 0 | 0 | 100% | 1 |
4GZ3_UDP_A_1101 | 89% | 35% | 0.103 | 0.981 | 1.08 | 1.47 | 1 | 5 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 87% | 37% | 0.111 | 0.982 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
5GY7_UDP_A_401 | 99% | 40% | 0.049 | 0.989 | 1.09 | 1.23 | 1 | 3 | 0 | 0 | 100% | 1 |