GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 7JMK designated by the Author
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
7JMK_GDP_B_401 | 22% | 40% | 0.246 | 0.863 | 1.23 | 1.12 | 3 | 2 | 0 | 0 | 100% | 0.53 |
7JFP_GDP_B_401 | 41% | 40% | 0.2 | 0.915 | 1.27 | 1.09 | 4 | 2 | 0 | 0 | 100% | 0.51 |
2FPG_GDP_B_397 | 32% | 25% | 0.204 | 0.88 | 1.28 | 1.77 | 2 | 5 | 2 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |