GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 7DN8 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 7DN8_GDP_B_202 | 77% | 23% | 0.139 | 0.978 | 1.2 | 1.96 | 2 | 7 | 1 | 0 | 100% | 1 |
| 7DN8_GDP_D_202 | 73% | 23% | 0.143 | 0.972 | 1.19 | 1.97 | 2 | 7 | 1 | 0 | 100% | 1 |
| 7DN8_GDP_F_202 | 73% | 23% | 0.146 | 0.973 | 1.2 | 1.96 | 2 | 7 | 1 | 0 | 100% | 1 |
| 7DN8_GDP_H_202 | 71% | 23% | 0.152 | 0.975 | 1.19 | 1.96 | 2 | 7 | 1 | 0 | 100% | 1 |
| 1R8S_GDP_A_401 | 92% | 48% | 0.088 | 0.979 | 1.06 | 0.95 | 3 | 1 | 0 | 0 | 100% | 1 |
| 1RE0_GDP_A_700 | 85% | 44% | 0.107 | 0.972 | 1.33 | 0.87 | 4 | 1 | 1 | 0 | 100% | 1 |
| 1S9D_GDP_A_401 | 75% | 32% | 0.147 | 0.981 | 1.26 | 1.45 | 2 | 5 | 0 | 0 | 100% | 1 |
| 7DN9_GDP_H_202 | 54% | 23% | 0.181 | 0.947 | 1.19 | 1.98 | 2 | 8 | 2 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
