PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 7D5X designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7D5X_PGV_C_306 | 68% | 49% | 0.105 | 0.969 | 0.84 | 1.02 | 2 | 5 | 1 | 0 | 100% | 1 |
| 7D5X_PGV_A_608 | 66% | 41% | 0.106 | 0.96 | 1.08 | 1.14 | 4 | 6 | 5 | 0 | 100% | 1 |
| 7D5X_PGV_P_306 | 66% | 44% | 0.108 | 0.963 | 0.79 | 1.27 | 2 | 4 | 1 | 0 | 100% | 1 |
| 7D5X_PGV_N_610 | 64% | 39% | 0.11 | 0.958 | 1.04 | 1.27 | 3 | 6 | 1 | 0 | 100% | 1 |
| 7D5X_PGV_Q_201 | 5% | 40% | 0.23 | 0.821 | 0.86 | 1.37 | 1 | 3 | 8 | 0 | 73% | 1 |
| 7D5X_PGV_A_606 | 4% | 63% | 0.224 | 0.822 | 0.52 | 0.7 | - | 1 | 3 | 0 | 65% | 1 |
| 7D5X_PGV_C_307 | 3% | 36% | 0.249 | 0.795 | 0.95 | 1.49 | 1 | 5 | 1 | 0 | 73% | 1 |
| 7D5X_PGV_P_307 | 1% | 39% | 0.269 | 0.74 | 1 | 1.32 | 1 | 4 | 3 | 0 | 75% | 1 |
| 5X1B_PGV_C_302 | 93% | 49% | 0.047 | 0.982 | 0.92 | 0.93 | 2 | 4 | 0 | 0 | 100% | 1 |
| 6NKN_PGV_A_607 | 93% | 40% | 0.046 | 0.98 | 0.85 | 1.36 | 2 | 5 | 0 | 0 | 100% | 1 |
| 3ASN_PGV_A_522 | 87% | 44% | 0.061 | 0.977 | 0.86 | 1.18 | 2 | 2 | 1 | 0 | 100% | 1 |
| 6NMF_PGV_A_606 | 87% | 49% | 0.061 | 0.975 | 0.93 | 0.92 | 2 | 3 | 0 | 0 | 100% | 1 |
| 9IKG_PGV_A_614 | 83% | 50% | 0.073 | 0.982 | 0.74 | 1.06 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5X1F_PGV_A_608 | 82% | 39% | 0.074 | 0.977 | 0.88 | 1.42 | 3 | 7 | 0 | 0 | 100% | 1 |