XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 6T8E designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6T8E_XYP_D_504 | 43% | 55% | 0.106 | 0.861 | 0.53 | 1 | - | 1 | 0 | 0 | 100% | 1 |
| 6T8E_XYP_C_504 | 37% | 52% | 0.116 | 0.842 | 0.65 | 1.06 | - | 1 | 0 | 0 | 100% | 1 |
| 6T8E_XYP_A_504 | 36% | 49% | 0.127 | 0.86 | 0.64 | 1.21 | - | 1 | 0 | 0 | 100% | 1 |
| 6T8E_XYP_B_504 | 27% | 53% | 0.13 | 0.813 | 0.59 | 1.04 | - | - | 0 | 0 | 100% | 1 |
| 6T8E_XYP_D_508 | 22% | 54% | 0.148 | 0.815 | 0.45 | 1.13 | - | 1 | 0 | 0 | 100% | 1 |
| 6T8E_XYP_B_508 | 17% | 43% | 0.161 | 0.802 | 0.55 | 1.55 | - | 3 | 0 | 0 | 100% | 1 |
| 6T8E_XYP_D_507 | 14% | 52% | 0.153 | 0.758 | 0.43 | 1.24 | - | 2 | 0 | 0 | 100% | 1 |
| 5NHE_XYP_A_507 | 52% | 54% | 0.1 | 0.891 | 0.57 | 1.03 | - | 1 | 1 | 0 | 100% | 1 |
| 6T8F_XYP_A_504 | 48% | 40% | 0.105 | 0.881 | 0.8 | 1.44 | - | 3 | 0 | 0 | 100% | 1 |
| 5NH9_XYP_C_501 | 44% | 35% | 0.106 | 0.864 | 1.02 | 1.48 | - | 3 | 1 | 0 | 100% | 1 |
| 5NH8_XYP_D_504 | 41% | 57% | 0.111 | 0.859 | 0.51 | 0.96 | - | - | 0 | 0 | 100% | 1 |
| 5NHD_XYP_A_504 | 41% | 52% | 0.107 | 0.852 | 0.55 | 1.13 | - | 1 | 0 | 0 | 100% | 1 |
| 4PMY_XYP_A_401 | 100% | 73% | 0.017 | 0.996 | 0.47 | 0.45 | - | - | 0 | 0 | 100% | 1 |
| 1OD8_XYP_A_1311 | 99% | 63% | 0.027 | 0.992 | 0.69 | 0.55 | - | - | 0 | 0 | 100% | 1 |
| 3FYU_XYP_C_1001 | 98% | 48% | 0.033 | 0.993 | 1.11 | 0.8 | - | - | 0 | 0 | 100% | 1 |
| 1W9T_XYP_B_1148 | 98% | 21% | 0.022 | 0.994 | 1.19 | 2.06 | 1 | 5 | 6 | 0 | 90% | 1 |
| 1V0M_XYP_A_1304 | 97% | 66% | 0.024 | 0.993 | 0.83 | 0.3 | - | - | 0 | 0 | 90% | 1 |














