XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 6AVL designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
6AVL_XYP_A_304 | 34% | 36% | 0.166 | 0.848 | 1.75 | 0.81 | 2 | - | 0 | 0 | 100% | 0.81 |
6B6P_XYP_A_305 | 20% | 24% | 0.275 | 0.876 | 1.49 | 1.59 | 1 | 4 | 0 | 0 | 100% | 1 |
6B6Q_XYP_A_305 | 19% | 32% | 0.251 | 0.847 | 1.56 | 1.16 | 1 | - | 0 | 0 | 100% | 1 |
6B6O_XYP_A_305 | 3% | 21% | 0.395 | 0.712 | 2.17 | 1.18 | 3 | 2 | 0 | 0 | 100% | 1 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 0.9 |
1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 0.9 |
1V0L_XYP_A_1305 | 98% | 72% | 0.055 | 0.992 | 0.52 | 0.57 | - | - | 0 | 0 | 90% | 0.9 |
3C6Q_XYP_C_500 | 92% | 30% | 0.082 | 0.972 | 1.82 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |