5Y3L
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG is a Ligand Of Interest in 5Y3L designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
5Y3L_NAG_A_1008 | 88% | 50% | 0.092 | 0.968 | 0.43 | 1.47 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1008 | 78% | 57% | 0.115 | 0.957 | 0.34 | 1.3 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1009 | 75% | 56% | 0.134 | 0.967 | 0.49 | 1.19 | - | 2 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1009 | 71% | 62% | 0.145 | 0.965 | 0.37 | 1.07 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1004 | 61% | 55% | 0.166 | 0.954 | 0.34 | 1.35 | - | 2 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1006 | 57% | 58% | 0.128 | 0.904 | 0.45 | 1.16 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1004 | 53% | 48% | 0.178 | 0.939 | 0.45 | 1.51 | - | 4 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1007 | 49% | 46% | 0.175 | 0.924 | 0.53 | 1.54 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1006 | 49% | 62% | 0.151 | 0.899 | 0.5 | 0.96 | - | - | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1007 | 37% | 33% | 0.193 | 0.892 | 0.74 | 1.87 | - | 7 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1003 | 37% | 50% | 0.221 | 0.92 | 0.44 | 1.48 | - | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1005 | 23% | 44% | 0.247 | 0.872 | 0.74 | 1.42 | - | 1 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1003 | 14% | 41% | 0.251 | 0.801 | 0.91 | 1.36 | 1 | 3 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1005 | 13% | 26% | 0.264 | 0.808 | 0.73 | 2.21 | - | 2 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_B_1010 | 11% | 24% | 0.349 | 0.864 | 0.77 | 2.28 | - | 5 | 0 | 0 | 100% | 0.9333 |
5Y3L_NAG_A_1010 | 3% | 14% | 0.435 | 0.767 | 1.13 | 2.66 | 1 | 7 | 0 | 0 | 100% | 0.9333 |
5Y3J_NAG_B_1009 | 91% | 43% | 0.08 | 0.966 | 0.57 | 1.61 | - | 4 | 0 | 0 | 100% | 0.9333 |
3WPC_NAG_A_902 | 74% | 50% | 0.1 | 0.928 | 0.79 | 1.12 | 1 | 1 | 0 | 0 | 100% | 0.9333 |
5Y3K_NAG_B_1008 | 72% | 63% | 0.127 | 0.951 | 0.32 | 1.06 | - | 2 | 0 | 0 | 100% | 0.9333 |
3WPD_NAG_A_907 | 65% | 55% | 0.148 | 0.949 | 0.54 | 1.2 | - | 1 | 0 | 0 | 100% | 0.9333 |
3WPB_NAG_A_902 | 64% | 27% | 0.152 | 0.95 | 0.42 | 2.45 | - | 3 | 1 | 0 | 100% | 0.9333 |
3PPS_NAG_B_760 | 100% | 44% | 0.028 | 0.993 | 0.57 | 1.57 | - | 3 | 0 | 0 | 100% | 0.9333 |
4AKM_NAG_A_1379 | 100% | 67% | 0.029 | 0.994 | 0.54 | 0.73 | - | - | 0 | 0 | 100% | 0.9333 |
3CQL_NAG_B_244 | 100% | 68% | 0.029 | 0.987 | 0.42 | 0.8 | - | - | 0 | 0 | 100% | 1 |
3RIK_NAG_D_509 | 100% | 8% | 0.035 | 0.991 | 2.03 | 2.54 | 4 | 7 | 2 | 0 | 100% | 0.9333 |
5VEM_NAG_B_509 | 100% | 74% | 0.003 | 0.957 | 0.46 | 0.56 | - | - | 0 | 0 | 100% | 0.9333 |