Ligand validation:5Y3L

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5Y3L_NAG_A_1008	86%	47%	0.054	0.96	0.44	1.46	-	4	0	100%	1
5Y3L_NAG_A_1009	83%	52%	0.06	0.958	0.48	1.21	-	2	0	100%	1
5Y3L_NAG_B_1008	79%	52%	0.064	0.949	0.35	1.3	-	2	0	100%	1
5Y3L_NAG_B_1004	76%	52%	0.06	0.93	0.35	1.29	-	1	0	100%	1
5Y3L_NAG_B_1009	76%	58%	0.066	0.94	0.36	1.06	-	1	0	100%	1
5Y3L_NAG_A_1004	72%	46%	0.066	0.919	0.46	1.49	-	4	0	100%	1
5Y3L_NAG_A_1006	67%	54%	0.08	0.923	0.45	1.12	-	2	0	100%	1
5Y3L_NAG_B_1006	56%	57%	0.091	0.888	0.51	0.96	-	-	0	100%	1
5Y3L_NAG_B_1005	52%	41%	0.083	0.857	0.77	1.44	1	1	0	100%	1
5Y3L_NAG_B_1007	51%	44%	0.095	0.873	0.53	1.53	-	2	0	100%	1
5Y3L_NAG_A_1007	51%	33%	0.095	0.871	0.73	1.86	-	7	0	100%	1
5Y3L_NAG_B_1003	29%	49%	0.112	0.79	0.45	1.38	-	3	0	100%	1
5Y3L_NAG_B_1010	27%	22%	0.119	0.789	0.8	2.37	-	5	0	100%	1
5Y3L_NAG_A_1005	22%	26%	0.103	0.73	0.75	2.22	-	2	0	100%	1
5Y3L_NAG_A_1003	12%	39%	0.135	0.708	0.94	1.37	1	3	0	100%	1
5Y3L_NAG_A_1010	12%	13%	0.136	0.707	1.19	2.68	1	7	0	100%	1
3WPD_NAG_A_907	81%	51%	0.061	0.952	0.54	1.2	-	1	0	100%	1
5Y3K_NAG_A_1009	79%	58%	0.064	0.95	0.31	1.08	-	1	1	100%	1
5Y3J_NAG_B_1009	79%	41%	0.065	0.949	0.55	1.62	-	4	0	100%	1
3WPC_NAG_B_902	68%	45%	0.082	0.932	0.71	1.3	1	2	0	100%	1
3WPB_NAG_A_902	66%	27%	0.085	0.926	0.42	2.45	-	3	1	100%	1
2QFR_NAG_B_451	100%	63%	0.013	0.998	0.49	0.72	-	1	0	100%	1
5LDS_NAG_C_1003	100%	65%	0.016	0.997	0.54	0.62	-	-	3	100%	1
7DDF_NAG_B_401	100%	84%	0.016	0.996	0.21	0.49	-	-	0	100%	1
2HQM_NAG_A_1301	100%	61%	0.018	0.996	0.59	0.7	-	-	0	100%	1
3THD_NAG_B_702	100%	48%	0.019	0.995	0.71	1.18	-	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5Y3L | pdb_00005y3l