PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
PMP is a Ligand Of Interest in 5VWQ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5VWQ_PMP_D_401 | 98% | 35% | 0.065 | 0.989 | 0.8 | 1.75 | - | 3 | 2 | 0 | 100% | 1 |
5VWQ_PMP_A_401 | 98% | 43% | 0.062 | 0.984 | 0.87 | 1.33 | 1 | 3 | 2 | 0 | 100% | 1 |
5VWQ_PMP_J_401 | 98% | 35% | 0.067 | 0.986 | 0.95 | 1.59 | 2 | 5 | 2 | 0 | 100% | 1 |
5VWQ_PMP_G_401 | 95% | 37% | 0.081 | 0.987 | 0.97 | 1.47 | 2 | 2 | 2 | 0 | 100% | 1 |
2QB3_PMP_A_700 | 99% | 24% | 0.05 | 0.985 | 2.08 | 1.04 | 4 | - | 0 | 0 | 100% | 0.4 |
2QBT_PMP_A_700 | 99% | 49% | 0.062 | 0.99 | 0.88 | 1.09 | 1 | 1 | 0 | 0 | 100% | 0.75 |
2QB2_PMP_A_700 | 86% | 27% | 0.097 | 0.967 | 1.73 | 1.24 | 4 | 1 | 0 | 0 | 100% | 0.35 |
2QA3_PMP_A_700 | 83% | 17% | 0.105 | 0.965 | 2.17 | 1.49 | 4 | 4 | 0 | 0 | 100% | 0.35 |
3PA9_PMP_A_600 | 80% | 51% | 0.139 | 0.99 | 0.85 | 1.03 | 1 | 1 | 1 | 0 | 100% | 1 |
8TN3_PMP_B_501 | 99% | 52% | 0.058 | 0.99 | 0.87 | 0.99 | - | 1 | 0 | 0 | 100% | 1 |
8PNX_PMP_A_301 | 99% | 55% | 0.053 | 0.984 | 0.56 | 1.16 | - | 2 | 0 | 0 | 100% | 1 |
6HBV_PMP_A_502 | 99% | 16% | 0.061 | 0.992 | 2.55 | 1.19 | 3 | 2 | 0 | 0 | 100% | 0.5 |
6Q8E_PMP_A_401 | 98% | 49% | 0.058 | 0.984 | 0.86 | 1.12 | - | 1 | 0 | 0 | 100% | 1 |