6DB: octopine
6DB is a Ligand Of Interest in 5VVI designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5VVI_6DB_A_301 | 81% | 26% | 0.062 | 0.952 | 1.05 | 1.93 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5VVI_6DB_C_301 | 72% | 25% | 0.072 | 0.932 | 1.06 | 1.97 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5VVI_6DB_B_301 | 57% | 20% | 0.09 | 0.89 | 1.15 | 2.18 | 1 | 6 | 0 | 0 | 100% | 1 |
| 5ITP_6DB_A_301 | 94% | 31% | 0.043 | 0.977 | 1.61 | 1.16 | 1 | 1 | 0 | 0 | 100% | 1 |
| 5ITO_6DB_A_304 | 91% | 32% | 0.048 | 0.971 | 1.57 | 1.16 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5ORG_6DB_B_313 | 84% | 30% | 0.062 | 0.967 | 1.56 | 1.26 | 2 | 3 | 0 | 0 | 100% | 1 |
| 5OT8_6DB_A_301 | 77% | 31% | 0.073 | 0.955 | 1.37 | 1.4 | 2 | 4 | 0 | 0 | 100% | 1 |
