UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5U6S designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5U6S_UDP_B_503 | 58% | 11% | 0.197 | 0.978 | 2.93 | 1.33 | 12 | 6 | 0 | 0 | 100% | 1 |
5U6S_UDP_A_503 | 54% | 10% | 0.21 | 0.976 | 2.97 | 1.43 | 13 | 7 | 0 | 0 | 100% | 1 |
5V2J_UDP_B_503 | 86% | 10% | 0.112 | 0.981 | 3.03 | 1.36 | 12 | 6 | 0 | 0 | 100% | 1 |
5V2K_UDP_A_503 | 84% | 11% | 0.117 | 0.981 | 2.98 | 1.24 | 12 | 5 | 0 | 0 | 100% | 1 |
5U6N_UDP_A_504 | 82% | 9% | 0.128 | 0.984 | 3.01 | 1.48 | 12 | 5 | 0 | 0 | 100% | 1 |
5U6M_UDP_A_502 | 71% | 8% | 0.15 | 0.971 | 3.07 | 1.52 | 13 | 9 | 0 | 0 | 100% | 1 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |