Ligand validation:5JYD

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
5JYD_NAD_D_901	95%	58%	0.041	0.983	0.58	0.83	1	1	0	100%	1
5JYD_NAD_C_901	95%	62%	0.042	0.983	0.54	0.71	1	1	0	100%	1
5JYD_NAD_E_901	87%	63%	0.057	0.969	0.53	0.68	-	2	0	100%	1
5JYD_NAD_G_901	85%	66%	0.061	0.969	0.43	0.68	-	1	0	100%	1
5JYD_NAD_B_901	83%	61%	0.063	0.963	0.5	0.79	-	2	0	100%	1
5JYD_NAD_H_901	74%	65%	0.077	0.949	0.38	0.78	-	2	0	100%	1
5JYD_NAD_A_901	70%	59%	0.084	0.945	0.59	0.81	-	2	1	100%	1
5JYD_NAD_F_901	55%	66%	0.105	0.908	0.45	0.67	-	1	2	100%	1
5U8P_NAD_B_400	100%	68%	0.023	0.995	0.43	0.63	-	1	0	100%	1
1DBV_NAD_O_336	100%	19%	0.012	0.999	1.39	1.98	5	12	0	100%	1
1OWB_NAD_A_3000	100%	7%	0.015	0.998	2.36	2.37	10	13	1	100%	1
9QJ0_NAD_A_501	100%	84%	0.015	0.998	0.35	0.36	-	-	2	100%	1
3CMC_NAD_R_408	100%	19%	0.016	0.998	1.58	1.84	4	15	0	100%	1
3UVE_NAD_B_300	100%	29%	0.016	0.998	1.2	1.63	4	14	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

5JYD | pdb_00005jyd