UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5FV9 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5FV9_UDP_C_1570 | 80% | 19% | 0.067 | 0.956 | 1.67 | 1.74 | 6 | 7 | 1 | 0 | 100% | 1 |
| 5FV9_UDP_A_1570 | 79% | 17% | 0.069 | 0.955 | 1.61 | 1.95 | 5 | 11 | 3 | 0 | 100% | 1 |
| 5FV9_UDP_E_1570 | 69% | 18% | 0.088 | 0.946 | 1.77 | 1.71 | 4 | 6 | 2 | 0 | 100% | 0.5 |
| 5FV9_UDP_D_1555 | 64% | 25% | 0.09 | 0.926 | 1.2 | 1.84 | 3 | 7 | 4 | 0 | 100% | 1 |
| 5FV9_UDP_F_1570 | 62% | 13% | 0.097 | 0.927 | 2.02 | 1.88 | 5 | 9 | 1 | 0 | 100% | 0.5 |
| 5FV9_UDP_B_1572 | 34% | 24% | 0.139 | 0.86 | 1.4 | 1.73 | 4 | 5 | 3 | 0 | 100% | 0.5 |
| 6E7I_UDP_A_601 | 96% | 25% | 0.039 | 0.983 | 1.41 | 1.64 | 3 | 7 | 0 | 0 | 100% | 1 |
| 5AJP_UDP_A_1570 | 95% | 31% | 0.044 | 0.984 | 1.21 | 1.51 | 2 | 4 | 0 | 0 | 100% | 1 |
| 5NDF_UDP_A_602 | 93% | 33% | 0.047 | 0.981 | 1.08 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 4D0T_UDP_C_1571 | 93% | 32% | 0.049 | 0.981 | 1.17 | 1.52 | 3 | 8 | 0 | 0 | 100% | 1 |
| 2FFU_UDP_A_601 | 86% | 8% | 0.059 | 0.97 | 2.57 | 2.07 | 6 | 10 | 0 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 31% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 68% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |














