PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 5DB5 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5DB5_PLP_A_501 | 66% | 27% | 0.161 | 0.967 | 1.39 | 1.55 | 1 | 4 | 1 | 0 | 100% | 0.9375 |
5DB5_PLP_B_501 | 61% | 25% | 0.172 | 0.96 | 1.44 | 1.61 | 1 | 4 | 0 | 0 | 100% | 0.9375 |
1JF9_PLP_A_500 | 100% | 12% | 0.047 | 0.994 | 1.28 | 2.78 | 1 | 11 | 0 | 0 | 100% | 0.9375 |
1KMK_PLP_A_500 | 99% | 5% | 0.061 | 0.99 | 1.82 | 3.48 | 4 | 12 | 0 | 0 | 100% | 0.9375 |
1KMJ_PLP_A_500 | 98% | 9% | 0.067 | 0.988 | 1.43 | 2.92 | 2 | 9 | 0 | 0 | 100% | 0.9375 |
7RUJ_PLP_A_502 | 91% | 52% | 0.097 | 0.984 | 0.88 | 0.96 | - | 1 | 0 | 0 | 100% | 0.9375 |
6O12_PLP_A_501 | 86% | 41% | 0.1 | 0.97 | 0.94 | 1.34 | 1 | 4 | 0 | 0 | 100% | 0.9375 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |
2BIG_PLP_B_1361 | 100% | 29% | 0.042 | 0.988 | 1.55 | 1.31 | 2 | 3 | 1 | 0 | 100% | 0.9375 |