PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose
PRP is a Ligand Of Interest in 5BYT designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5BYT_PRP_A_402 | 78% | 21% | 0.122 | 0.966 | 1.76 | 1.54 | 2 | 6 | 0 | 0 | 100% | 1 |
5BYT_PRP_B_402 | 53% | 20% | 0.179 | 0.941 | 1.77 | 1.62 | 2 | 8 | 0 | 0 | 100% | 0.6 |
4GIU_PRP_A_401 | 96% | 56% | 0.072 | 0.979 | 0.59 | 1.11 | - | 2 | 0 | 0 | 100% | 1 |
4ZOF_PRP_A_402 | 93% | 32% | 0.086 | 0.98 | 1.28 | 1.4 | 3 | 3 | 0 | 0 | 100% | 1 |
3TWP_PRP_A_401 | 92% | 34% | 0.086 | 0.977 | 1.27 | 1.34 | 2 | 6 | 0 | 0 | 100% | 1 |
3QS8_PRP_C_400 | 92% | 28% | 0.094 | 0.983 | 1.77 | 1.15 | 4 | 3 | 0 | 0 | 100% | 1 |
4N5V_PRP_A_401 | 90% | 35% | 0.101 | 0.985 | 1.41 | 1.18 | 2 | 4 | 0 | 0 | 100% | 1 |
1FSG_PRP_C_303 | 100% | 43% | 0.03 | 0.996 | 1.04 | 1.16 | 1 | 1 | 0 | 0 | 100% | 1 |
6D9R_PRP_A_202 | 98% | 4% | 0.062 | 0.988 | 4.35 | 1.47 | 7 | 7 | 0 | 0 | 100% | 1 |
1TC2_PRP_B_811 | 98% | 29% | 0.064 | 0.985 | 1.28 | 1.53 | 2 | 4 | 0 | 0 | 100% | 1 |
6FCH_PRP_B_201 | 98% | 60% | 0.068 | 0.988 | 0.68 | 0.83 | - | - | 0 | 0 | 100% | 1 |
3DKL_PRP_B_504 | 98% | 47% | 0.068 | 0.987 | 0.71 | 1.32 | - | 6 | 1 | 0 | 100% | 1 |