XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 4PN2 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4PN2_XYP_B_403 | 99% | 47% | 0.029 | 0.989 | 0.58 | 1.32 | - | 1 | 0 | 0 | 90% | 1 |
| 4PN2_XYP_B_402 | 98% | 24% | 0.054 | 0.988 | 1.39 | 1.62 | 2 | 3 | 0 | 0 | 100% | 1 |
| 4PN2_XYP_A_403 | 98% | 40% | 0.035 | 0.983 | 0.62 | 1.57 | - | 2 | 3 | 0 | 90% | 1 |
| 4PN2_XYP_A_404 | 97% | 24% | 0.039 | 0.98 | 0.96 | 2.02 | - | 4 | 3 | 0 | 90% | 1 |
| 4PN2_XYP_A_402 | 97% | 14% | 0.059 | 0.983 | 1.54 | 2.21 | 3 | 7 | 0 | 0 | 100% | 1 |
| 4PN2_XYP_B_404 | 93% | 15% | 0.048 | 0.968 | 1.13 | 2.49 | 2 | 4 | 0 | 0 | 90% | 1 |
| 4PMY_XYP_A_401 | 100% | 73% | 0.017 | 0.996 | 0.47 | 0.45 | - | - | 0 | 0 | 100% | 1 |
| 1OD8_XYP_A_1311 | 100% | 64% | 0.027 | 0.992 | 0.69 | 0.55 | - | - | 0 | 0 | 100% | 1 |
| 3FYU_XYP_C_1001 | 100% | 48% | 0.033 | 0.993 | 1.11 | 0.8 | - | - | 0 | 0 | 100% | 1 |
| 5L6G_XYP_A_510 | 100% | 65% | 0.033 | 0.988 | 0.42 | 0.77 | - | - | 0 | 0 | 100% | 1 |
| 1W9T_XYP_B_1148 | 100% | 20% | 0.022 | 0.994 | 1.19 | 2.06 | 1 | 5 | 6 | 0 | 90% | 1 |
| 1V0M_XYP_A_1304 | 99% | 67% | 0.024 | 0.993 | 0.83 | 0.3 | - | - | 0 | 0 | 90% | 1 |
