API: 2,6-DIAMINOPIMELIC ACID
API is a Ligand Of Interest in 3TD4 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3TD4_API_A_401 | 67% | 41% | 0.096 | 0.956 | 1.27 | 0.94 | 1 | - | 0 | 0 | 100% | 1 |
| 3TD4_API_G_401 | 62% | 8% | 0.103 | 0.947 | 1.6 | 3.03 | 2 | 2 | 0 | 0 | 100% | 1 |
| 3TD4_API_H_401 | 61% | 7% | 0.1 | 0.938 | 1.33 | 3.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3TD4_API_F_401 | 61% | 31% | 0.105 | 0.944 | 1.42 | 1.33 | 1 | - | 0 | 0 | 100% | 1 |
| 3TD4_API_C_401 | 58% | 33% | 0.102 | 0.928 | 1.15 | 1.48 | - | 1 | 0 | 0 | 100% | 1 |
| 3TD4_API_E_401 | 58% | 33% | 0.102 | 0.925 | 1.25 | 1.38 | 1 | 2 | 0 | 0 | 100% | 1 |
| 3TD4_API_D_401 | 55% | 53% | 0.11 | 0.926 | 0.94 | 0.73 | 1 | - | 0 | 0 | 100% | 1 |
| 3TD4_API_B_401 | 54% | 35% | 0.113 | 0.925 | 1.34 | 1.21 | 2 | 1 | 1 | 0 | 100% | 1 |
| 4G88_API_A_401 | 79% | 33% | 0.067 | 0.96 | 1.45 | 1.22 | 2 | 2 | 0 | 0 | 100% | 1 |
| 2DAP_API_A_902 | 94% | 5% | 0.042 | 0.979 | 2.26 | 3 | 6 | 5 | 1 | 0 | 100% | 1 |
| 5M47_API_A_301 | 80% | 40% | 0.069 | 0.969 | 1.04 | 1.24 | 1 | 2 | 1 | 0 | 100% | 1 |
| 4WCK_API_A_533 | 77% | 49% | 0.068 | 0.953 | 1 | 0.88 | - | - | 0 | 0 | 100% | 1 |
| 8G6P_API_A_809 | 76% | 48% | 0.069 | 0.953 | 0.98 | 0.93 | - | - | 0 | 0 | 100% | 1 |
| 4Q6Q_API_A_505 | 70% | 42% | 0.076 | 0.936 | 1.06 | 1.11 | - | 1 | 1 | 0 | 100% | 1 |














