GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 3SS8 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3SS8_GDP_A_300 | 84% | 30% | 0.118 | 0.98 | 1.39 | 1.39 | 2 | 5 | 0 | 0 | 100% | 1 |
| 3SS8_GDP_B_300 | 77% | 33% | 0.136 | 0.977 | 1.46 | 1.2 | 4 | 4 | 1 | 0 | 100% | 1 |
| 7BWV_GDP_A_301 | 89% | 16% | 0.098 | 0.976 | 1.97 | 1.7 | 7 | 6 | 0 | 0 | 100% | 1 |
| 3B1W_GDP_A_300 | 84% | 31% | 0.109 | 0.97 | 1.38 | 1.38 | 3 | 4 | 0 | 0 | 100% | 1 |
| 7BVU_GDP_A_302 | 79% | 44% | 0.12 | 0.966 | 0.92 | 1.22 | 1 | 4 | 1 | 0 | 100% | 1 |
| 4NON_GDP_B_301 | 77% | 45% | 0.113 | 0.951 | 0.93 | 1.18 | 1 | 3 | 0 | 0 | 100% | 1 |
| 3LX8_GDP_A_300 | 55% | 29% | 0.171 | 0.941 | 1.4 | 1.43 | 6 | 4 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
