UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3RUF designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3RUF_UDP_S_344 | 99% | 30% | 0.039 | 0.989 | 1.16 | 1.53 | 3 | 8 | 0 | 0 | 100% | 1 |
| 3RUF_UDP_b_343 | 99% | 1% | 0.043 | 0.986 | 6.2 | 1.59 | 2 | 8 | 0 | 0 | 100% | 1 |
| 3RUF_UDP_B_344 | 99% | 19% | 0.044 | 0.984 | 1.56 | 1.75 | 2 | 8 | 0 | 0 | 100% | 1 |
| 3RUF_UDP_A_344 | 98% | 19% | 0.051 | 0.981 | 1.48 | 1.85 | 3 | 10 | 1 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |














