TRD: TRIDECANE
TRD is a Ligand Of Interest in 3OMI designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3OMI_TRD_A_610 | 19% | 80% | 0.167 | 0.823 | 0.36 | 0.43 | - | - | 1 | 0 | 100% | 1 |
| 3OMI_TRD_D_303 | 18% | 76% | 0.192 | 0.853 | 0.21 | 0.63 | - | - | 1 | 0 | 100% | 1 |
| 3OMI_TRD_B_305 | 7% | 83% | 0.221 | 0.865 | 0.23 | 0.5 | - | - | 2 | 0 | 69% | 0.75 |
| 3OMI_TRD_D_304 | 7% | 87% | 0.189 | 0.841 | 0.25 | 0.39 | - | - | 0 | 0 | 54% | 1 |
| 3OMI_TRD_A_609 | 5% | 77% | 0.25 | 0.804 | 0.26 | 0.56 | - | - | 1 | 0 | 100% | 1 |
| 3OMI_TRD_A_604 | 5% | 86% | 0.201 | 0.828 | 0.29 | 0.38 | - | - | 0 | 0 | 54% | 1 |
| 3OMI_TRD_A_606 | 3% | 84% | 0.223 | 0.807 | 0.31 | 0.4 | - | - | 0 | 0 | 54% | 1 |
| 3OMI_TRD_C_607 | 1% | 81% | 0.309 | 0.784 | 0.33 | 0.44 | - | - | 0 | 0 | 85% | 1 |
| 3OMI_TRD_A_605 | 1% | 83% | 0.24 | 0.737 | 0.27 | 0.46 | - | - | 0 | 0 | 54% | 1 |
| 3DTU_TRD_D_7 | 36% | 77% | 0.148 | 0.885 | 0.24 | 0.58 | - | - | 2 | 0 | 100% | 1 |
| 2GSM_TRD_A_5006 | 32% | 77% | 0.137 | 0.847 | 0.28 | 0.54 | - | - | 2 | 0 | 100% | 1 |
| 6PW0_TRD_D_303 | 30% | 70% | 0.148 | 0.927 | 0.12 | 0.85 | - | - | 0 | 0 | 69% | 1 |
| 6PW1_TRD_D_301 | 29% | 72% | 0.141 | 0.913 | 0.12 | 0.81 | - | - | 0 | 0 | 69% | 1 |
| 3OMA_TRD_D_3 | 18% | 79% | 0.206 | 0.882 | 0.2 | 0.59 | - | - | 1 | 0 | 100% | 1 |
| 6GA3_TRD_A_303 | 96% | 71% | 0.035 | 0.978 | 0.11 | 0.84 | - | - | 0 | 0 | 100% | 1 |
| 6GA5_TRD_A_303 | 92% | 73% | 0.042 | 0.966 | 0.1 | 0.79 | - | - | 3 | 0 | 100% | 1 |
| 6GAG_TRD_A_303 | 90% | 73% | 0.048 | 0.966 | 0.1 | 0.79 | - | - | 0 | 0 | 100% | 1 |
| 6GA7_TRD_A_303 | 89% | 73% | 0.05 | 0.967 | 0.1 | 0.79 | - | - | 0 | 0 | 100% | 1 |
| 6GAH_TRD_A_303 | 89% | 73% | 0.048 | 0.963 | 0.1 | 0.79 | - | - | 1 | 0 | 100% | 1 |














