UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3I0D designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3I0D_UDP_A_1 | 19% | 6% | 0.202 | 0.799 | 2.28 | 2.74 | 10 | 13 | 3 | 0 | 100% | 1 |
6GX2_UDP_A_402 | 99% | 52% | 0.053 | 0.989 | 0.86 | 1.01 | - | 2 | 0 | 0 | 100% | 1 |
5M7C_UDP_B_602 | 99% | 34% | 0.053 | 0.984 | 1.11 | 1.49 | - | 6 | 0 | 0 | 100% | 1 |
3V0Q_UDP_B_402 | 96% | 38% | 0.07 | 0.979 | 0.96 | 1.44 | 1 | 6 | 0 | 0 | 100% | 1 |
5M7B_UDP_A_602 | 95% | 41% | 0.077 | 0.98 | 1 | 1.27 | 1 | 5 | 0 | 0 | 100% | 1 |
2RJ8_UDP_A_1 | 86% | 29% | 0.083 | 0.951 | 1.28 | 1.53 | 3 | 6 | 0 | 0 | 100% | 1 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.032 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |