XYP: beta-D-xylopyranose
XYP is a Ligand Of Interest in 3FYT designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3FYT_XYP_C_1003 | 33% | 46% | 0.17 | 0.849 | 1.21 | 0.87 | 2 | - | 0 | 0 | 100% | 1 |
3FYT_XYP_E_1000 | 29% | 49% | 0.262 | 0.922 | 1.06 | 0.91 | - | - | 0 | 0 | 100% | 1 |
3FYT_XYP_C_1002 | 27% | 52% | 0.217 | 0.865 | 0.99 | 0.88 | - | - | 0 | 0 | 100% | 1 |
3FYT_XYP_F_1001 | 23% | 47% | 0.229 | 0.853 | 1.14 | 0.91 | 1 | - | 0 | 0 | 100% | 1 |
3FYT_XYP_H_1005 | 19% | 49% | 0.275 | 0.871 | 1.08 | 0.89 | 1 | - | 0 | 0 | 100% | 1 |
3FYT_XYP_L_1004 | 18% | 51% | 0.308 | 0.901 | 1.02 | 0.89 | - | - | 0 | 0 | 100% | 1 |
3FYU_XYP_M_1003 | 44% | 49% | 0.182 | 0.91 | 1.13 | 0.86 | - | - | 0 | 0 | 100% | 1 |
1OD8_XYP_A_1311 | 100% | 64% | 0.047 | 0.992 | 0.75 | 0.64 | - | - | 0 | 0 | 100% | 1 |
1V0M_XYP_A_1304 | 100% | 71% | 0.035 | 0.993 | 0.82 | 0.33 | - | - | 0 | 0 | 90% | 0.9 |
1V0N_XYP_A_1306 | 98% | 60% | 0.048 | 0.989 | 0.76 | 0.78 | - | - | 0 | 0 | 90% | 0.9 |
1V0L_XYP_A_1305 | 98% | 72% | 0.055 | 0.992 | 0.52 | 0.57 | - | - | 0 | 0 | 90% | 0.9 |
3C6Q_XYP_C_500 | 92% | 30% | 0.082 | 0.972 | 1.82 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |