KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
KDO is a Ligand Of Interest in 3DUS designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3DUS_KDO_C_108 | 97% | 44% | 0.034 | 0.985 | 1 | 1.09 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3DUS_KDO_A_107 | 96% | 44% | 0.038 | 0.979 | 0.99 | 1.1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3DUR_KDO_A_303 | 100% | 29% | 0.021 | 0.994 | 1.55 | 1.32 | 3 | 2 | 0 | 0 | 100% | 1 |
| 3DUU_KDO_B_114 | 100% | 41% | 0.021 | 0.993 | 1.01 | 1.21 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3DV6_KDO_B_114 | 36% | 33% | 0.118 | 0.834 | 1.01 | 1.62 | 1 | 2 | 5 | 1 | 100% | 1 |
| 3DV4_KDO_B_114 | 18% | 38% | 0.125 | 0.74 | 0.99 | 1.35 | 1 | 1 | 0 | 0 | 100% | 1 |
| 9YFZ_KDO_A_402 | 100% | 30% | 0.021 | 0.995 | 1.56 | 1.27 | 2 | 2 | 0 | 0 | 100% | 1 |
| 3K8D_KDO_A_1244 | 99% | 12% | 0.017 | 0.997 | 2.53 | 1.56 | 5 | 4 | 0 | 1 | 94% | 1 |
| 9YFY_KDO_A_402 | 98% | 30% | 0.024 | 0.994 | 1.61 | 1.2 | 2 | 2 | 0 | 0 | 94% | 1 |
| 4PF6_KDO_A_401 | 98% | 29% | 0.032 | 0.985 | 1.84 | 1.04 | 4 | 1 | 0 | 0 | 100% | 1 |
