Ligand validation:2YDV

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Model completeness	Average occupancy
2YDV_SOG_A_501	22%	53%	0.165	0.838	0.81	0.83	1	-	3	100%	1
2YDV_SOG_A_502	3%	50%	0.254	0.751	0.89	0.91	1	2	0	100%	1
2YDV_SOG_A_505	2%	52%	0.242	0.69	0.82	0.88	1	1	0	100%	1
2YDV_SOG_A_504	2%	50%	0.254	0.668	0.93	0.88	1	1	2	100%	1
2YDV_SOG_A_503	1%	48%	0.272	0.643	0.91	1	1	1	0	100%	1
2YDO_SOG_A_501	17%	52%	0.185	0.839	0.81	0.87	1	1	0	100%	1
6YU6_SOG_B_506	97%	88%	0.037	0.989	0.14	0.48	-	1	0	100%	1
6TQ7_SOG_A_404	68%	70%	0.078	0.925	0.3	0.68	-	-	0	100%	1
6TQ9_SOG_A_403	68%	83%	0.083	0.931	0.28	0.45	-	-	9	100%	1
6TP3_SOG_B_405	67%	34%	0.068	0.9	0.93	1.65	-	3	0	100%	1
6TQ6_SOG_B_406	65%	52%	0.093	0.933	0.86	0.86	1	-	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

2YDV | pdb_00002ydv