PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 2VYC designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2VYC_PLP_A_1386 | 13% | 17% | 0.424 | 0.969 | 2.09 | 1.53 | 3 | 4 | 0 | 0 | 100% | 0.4688 |
2VYC_PLP_H_1386 | 12% | 12% | 0.439 | 0.977 | 2 | 2.04 | 4 | 4 | 1 | 0 | 100% | 0.4688 |
2VYC_PLP_C_1386 | 12% | 16% | 0.441 | 0.978 | 1.99 | 1.72 | 4 | 5 | 0 | 0 | 100% | 0.4688 |
2VYC_PLP_F_1386 | 10% | 13% | 0.46 | 0.976 | 1.98 | 2.01 | 4 | 7 | 0 | 0 | 100% | 0.4688 |
2VYC_PLP_B_1386 | 9% | 14% | 0.458 | 0.961 | 1.95 | 1.89 | 3 | 5 | 1 | 0 | 100% | 0.4688 |
2VYC_PLP_J_1386 | 9% | 15% | 0.482 | 0.974 | 2.05 | 1.74 | 4 | 4 | 0 | 0 | 100% | 0.4688 |
2VYC_PLP_D_1386 | 8% | 16% | 0.49 | 0.975 | 1.94 | 1.74 | 4 | 4 | 1 | 0 | 100% | 0.4688 |
2VYC_PLP_G_1386 | 8% | 13% | 0.492 | 0.977 | 1.99 | 2.01 | 4 | 6 | 0 | 0 | 100% | 0.4688 |
2VYC_PLP_I_1386 | 6% | 12% | 0.518 | 0.961 | 2.12 | 1.95 | 5 | 4 | 0 | 0 | 100% | 0.4688 |
2VYC_PLP_E_1386 | 6% | 17% | 0.526 | 0.969 | 2.01 | 1.65 | 4 | 3 | 1 | 0 | 100% | 0.4688 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
9J0V_PLP_A_301 | 100% | 36% | 0.037 | 0.987 | 0.82 | 1.68 | - | 5 | 0 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |