GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2HDN designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2HDN_GDP_L_6999 | 83% | 35% | 0.12 | 0.978 | 1.07 | 1.46 | 2 | 7 | 0 | 0 | 100% | 1 |
| 2HDN_GDP_J_5999 | 83% | 35% | 0.126 | 0.984 | 1.22 | 1.34 | 4 | 5 | 0 | 0 | 100% | 1 |
| 2HDN_GDP_H_4999 | 76% | 36% | 0.137 | 0.973 | 1.12 | 1.38 | 2 | 6 | 1 | 0 | 100% | 1 |
| 2HDN_GDP_F_3999 | 71% | 38% | 0.139 | 0.961 | 0.99 | 1.41 | 2 | 7 | 1 | 0 | 100% | 1 |
| 2HDN_GDP_B_1999 | 69% | 37% | 0.151 | 0.965 | 1.15 | 1.33 | 4 | 7 | 1 | 0 | 100% | 1 |
| 2HDN_GDP_D_2999 | 68% | 36% | 0.162 | 0.974 | 1.11 | 1.42 | 2 | 7 | 1 | 0 | 100% | 1 |
| 2HCJ_GDP_A_999 | 88% | 53% | 0.106 | 0.982 | 0.94 | 0.88 | 2 | 3 | 0 | 0 | 100% | 1 |
| 5I4R_GDP_G_101 | 38% | 58% | 0.194 | 0.895 | 0.74 | 0.87 | - | 1 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
