NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG is a Ligand Of Interest in 2GVY designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2GVY_NAG_A_500 | 12% | 50% | 0.209 | 0.737 | 0.57 | 1.34 | - | 3 | 0 | 0 | 100% | 0.9333 |
2GVY_NAG_B_500 | 12% | 23% | 0.226 | 0.754 | 0.68 | 2.45 | 1 | 4 | 0 | 1 | 100% | 0.9333 |
6YQ7_NAG_B_501 | 72% | 37% | 0.101 | 0.925 | 0.66 | 1.76 | - | 3 | 0 | 0 | 100% | 0.9333 |
6YQB_NAG_AAA_503 | 72% | 39% | 0.106 | 0.928 | 1.01 | 1.38 | 1 | 2 | 0 | 0 | 100% | 0.9333 |
6YQC_NAG_BBB_504 | 67% | 49% | 0.094 | 0.9 | 0.67 | 1.28 | - | 3 | 0 | 0 | 100% | 0.9333 |
6YQ9_NAG_AAA_501 | 66% | 38% | 0.097 | 0.902 | 0.92 | 1.5 | - | 2 | 0 | 0 | 100% | 0.9333 |
6YQA_NAG_BBB_502 | 58% | 46% | 0.104 | 0.882 | 0.75 | 1.33 | - | 3 | 0 | 0 | 100% | 0.9333 |
3PPS_NAG_B_760 | 100% | 44% | 0.028 | 0.993 | 0.57 | 1.57 | - | 3 | 0 | 0 | 100% | 0.9333 |
4AKM_NAG_A_1379 | 100% | 67% | 0.029 | 0.994 | 0.54 | 0.73 | - | - | 0 | 0 | 100% | 0.9333 |
3CQL_NAG_B_244 | 100% | 68% | 0.029 | 0.987 | 0.42 | 0.8 | - | - | 0 | 0 | 100% | 1 |
3RIK_NAG_D_509 | 100% | 8% | 0.035 | 0.991 | 2.03 | 2.54 | 4 | 7 | 2 | 0 | 100% | 0.9333 |
5VEM_NAG_B_509 | 100% | 74% | 0.003 | 0.957 | 0.46 | 0.56 | - | - | 0 | 0 | 100% | 0.9333 |