GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 1K5G designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 1K5G_GDP_D_2250 | 80% | 26% | 0.123 | 0.972 | 1.47 | 1.55 | 5 | 7 | 5 | 0 | 100% | 1 |
| 1K5G_GDP_J_4250 | 78% | 24% | 0.125 | 0.968 | 1.47 | 1.63 | 4 | 10 | 4 | 0 | 100% | 1 |
| 1K5G_GDP_G_3250 | 73% | 27% | 0.132 | 0.96 | 1.43 | 1.53 | 4 | 8 | 5 | 0 | 100% | 1 |
| 1K5G_GDP_A_1250 | 64% | 26% | 0.152 | 0.952 | 1.49 | 1.51 | 4 | 9 | 5 | 0 | 100% | 1 |
| 3GJ0_GDP_A_302 | 99% | 48% | 0.061 | 0.988 | 1 | 0.99 | 1 | 1 | 0 | 0 | 100% | 1 |
| 5CIW_GDP_A_301 | 98% | 40% | 0.06 | 0.983 | 0.85 | 1.48 | - | 3 | 0 | 0 | 100% | 1 |
| 3GJ8_GDP_A_302 | 98% | 48% | 0.067 | 0.987 | 0.94 | 1.08 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5CIQ_GDP_A_301 | 97% | 41% | 0.068 | 0.983 | 1 | 1.29 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5CIT_GDP_A_301 | 95% | 38% | 0.073 | 0.979 | 1.1 | 1.32 | 3 | 5 | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
