☰ Navigation Tabs
Open state of D-ornithine 4,5-aminomutase from Fervidobacterium nodosum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold A7HNJ4 in silico model AlphaFold A7HNJ5
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.439 f_angle_d 0.493 f_chiral_restr 0.042 f_plane_restr 0.004 f_bond_d 0.002
Sample D-ornithine 4,5-aminomutase from Fervidobacterium nodosum
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 398801 Reported Resolution (Å) 2.8 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol BACKBONE TRACE Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 55.2
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 200 Maximum Defocus (nm) 1000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC IMAGE ACQUISITION EPU MODEL FITTING UCSF ChimeraX RECONSTRUCTION cryoSPARC MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY