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GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5LZS in silico model AlphaFold AF-O00178-F1
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.7106 f_angle_d 1.0096 f_chiral_restr 0.07 f_plane_restr 0.014 f_bond_d 0.0079
Sample GTPBP1*GCP*Phe-tRNA complex with 80S ribosome
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 7386 Reported Resolution (Å) 3.1 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5LZS) Refinement Space Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 29.7955
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO CTF CORRECTION RELION MODEL FITTING ISOLDE MODEL REFINEMENT PHENIX 1.21.1_5286 INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION CLASSIFICATION cryoSPARC RECONSTRUCTION RELION
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION