☰ Navigation Tabs
Photo-Induced Distance-Dependent Electron Transfer of Fluorescent Proteins- PsmO-Cr (PSmOrange-chromium)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9X8B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2M NaCl, 20-28%
PEG3350
Crystal Properties Matthews coefficient Solvent content 2.16 42.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.85 α = 90 b = 83.217 β = 111.4 c = 38.862 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL10U2 0.72046 SSRF BL10U2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.32 83.22 99.1 0.081 0.038 0.996 9.1 5.8 50685
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.32 1.35 0.588 0.365 0.592 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.32 41.64 48281 2357 99.1 0.17967 0.17868 0.1917 0.20034 0.2123 RANDOM 11.742
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 0.58 -0.8 -0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.48 r_dihedral_angle_1_deg 7.214 r_dihedral_angle_2_deg 5.146 r_long_range_B_refined 3.742 r_long_range_B_other 3.724 r_scangle_other 2.335 r_scbond_it 1.456 r_scbond_other 1.455 r_mcangle_other 1.402 r_mcangle_it 1.401
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.48 r_dihedral_angle_1_deg 7.214 r_dihedral_angle_2_deg 5.146 r_long_range_B_refined 3.742 r_long_range_B_other 3.724 r_scangle_other 2.335 r_scbond_it 1.456 r_scbond_other 1.455 r_mcangle_other 1.402 r_mcangle_it 1.401 r_angle_refined_deg 1.359 r_mcbond_it 0.887 r_mcbond_other 0.875 r_angle_other_deg 0.514 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1802 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement Aimless data scaling DIALS data reduction MOLREP phasing PDB_EXTRACT data extraction