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Photo-Induced Distance-Dependent Electron Transfer of Fluorescent Proteins- native PSmOrange
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GES
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 22% PEG3350
Crystal Properties Matthews coefficient Solvent content 1.95 36.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.366 α = 90 b = 83.43 β = 115.74 c = 37.493 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2023-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.97918 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 41.71 93.8 0.101 0.078 0.992 7.5 2.4 12583
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.12 0.407 0.341 0.758 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.01 25.03 11906 649 93.47 0.21398 0.21254 0.2195 0.24005 0.2417 RANDOM 18.823
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 -0.42 -0.72 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.978 r_dihedral_angle_1_deg 7.386 r_dihedral_angle_2_deg 4.366 r_long_range_B_refined 4.056 r_long_range_B_other 4.052 r_scangle_other 2.276 r_mcangle_it 1.655 r_mcangle_other 1.654 r_scbond_it 1.332 r_scbond_other 1.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.978 r_dihedral_angle_1_deg 7.386 r_dihedral_angle_2_deg 4.366 r_long_range_B_refined 4.056 r_long_range_B_other 4.052 r_scangle_other 2.276 r_mcangle_it 1.655 r_mcangle_other 1.654 r_scbond_it 1.332 r_scbond_other 1.332 r_angle_refined_deg 1.043 r_mcbond_it 0.987 r_mcbond_other 0.987 r_angle_other_deg 0.384 r_chiral_restr 0.052 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1822 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing PDB_EXTRACT data extraction