9UVV | pdb_00009uvv

Cryo-EM structure of Vasopressin receptor 2 (V2R)-BRIL/anti BRIL SRP2070 Fab antibody complex with tolvaptan


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it31.784
r_lrange_other31.783
r_scangle_it21.622
r_scangle_other21.619
r_dihedral_angle_2_deg21.137
r_mcangle_it16.947
r_mcangle_other16.945
r_dihedral_angle_3_deg13.525
r_scbond_it12.673
r_scbond_other12.671
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it31.784
r_lrange_other31.783
r_scangle_it21.622
r_scangle_other21.619
r_dihedral_angle_2_deg21.137
r_mcangle_it16.947
r_mcangle_other16.945
r_dihedral_angle_3_deg13.525
r_scbond_it12.673
r_scbond_other12.671
r_dihedral_angle_6_deg12.351
r_mcbond_it10.328
r_mcbond_other10.328
r_dihedral_angle_1_deg6.931
r_angle_refined_deg1.511
r_angle_other_deg0.633
r_nbd_refined0.204
r_nbtor_refined0.17
r_symmetry_nbd_other0.154
r_xyhbond_nbd_refined0.105
r_chiral_restr0.08
r_symmetry_nbtor_other0.07
r_symmetry_xyhbond_nbd_other0.037
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_gen_planes_other0.003
r_bond_other_d
Sample
Cryo-EM structure of Vasopressin receptor 2 (V2R)-BRIL/anti BRIL SRP2070 Fab antibody complex with tolvaptan
Sample Components
Vasopressin receptor 2 (V2R)-BRIL
anti BRIL SRP2070 Fab antibody
Specimen Preparation
Sample Aggregation StatePARTICLE
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles380888
Reported Resolution (Å)3.02
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)800
Maximum Defocus (nm)1600
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
NONE