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Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q89E variant (complex with LC)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RHF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 300 0.2 M Trimethylamine N-oxide dihydrate, 0.1 M Tris pH 8.5, 20% w/v Polyethylene glycol monomethyl ether 2,000
Crystal Properties Matthews coefficient Solvent content 2.27 45.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.749 α = 90 b = 107.577 β = 90 c = 38.932 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 16M 2023-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17UM 0.97919 SSRF BL17UM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.663 48.099 92.7 0.996 7.9 7.17 19963
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.663 1.718 0.581
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6RHF 1.663 48.099 17359 856 63.451 0.192 0.1892 0.198 0.2382 0.2462 18.052
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.129 0.206 -0.077
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.907 r_dihedral_angle_3_deg 10.133 r_dihedral_angle_1_deg 6.495 r_lrange_it 5.541 r_lrange_other 5.54 r_scangle_it 4.771 r_scangle_other 4.77 r_scbond_it 3.247 r_scbond_other 3.245 r_dihedral_angle_2_deg 3.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.907 r_dihedral_angle_3_deg 10.133 r_dihedral_angle_1_deg 6.495 r_lrange_it 5.541 r_lrange_other 5.54 r_scangle_it 4.771 r_scangle_other 4.77 r_scbond_it 3.247 r_scbond_other 3.245 r_dihedral_angle_2_deg 3.093 r_mcangle_it 2.729 r_mcangle_other 2.728 r_mcbond_it 1.967 r_mcbond_other 1.964 r_angle_refined_deg 0.771 r_angle_other_deg 0.265 r_nbd_refined 0.218 r_symmetry_xyhbond_nbd_refined 0.215 r_symmetry_nbd_other 0.213 r_nbd_other 0.199 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.149 r_symmetry_nbd_refined 0.125 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.036 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1592 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction STARANISO data scaling MOLREP phasing