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DalDro bound to the terminating Escherichia coli 70S ribosome
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 22.57 r_lrange_other 22.57 r_scangle_it 16.328 r_scangle_other 16.328 r_mcangle_it 14.775 r_mcangle_other 14.775 r_dihedral_angle_3_deg 14.359 r_dihedral_angle_6_deg 13.612 r_scbond_it 9.912 r_scbond_other 9.912
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 22.57 r_lrange_other 22.57 r_scangle_it 16.328 r_scangle_other 16.328 r_mcangle_it 14.775 r_mcangle_other 14.775 r_dihedral_angle_3_deg 14.359 r_dihedral_angle_6_deg 13.612 r_scbond_it 9.912 r_scbond_other 9.912 r_mcbond_it 9.147 r_mcbond_other 9.144 r_dihedral_angle_1_deg 7.881 r_dihedral_angle_2_deg 7.576 r_dihedral_angle_other_2_deg 1.693 r_angle_refined_deg 1.091 r_angle_other_deg 0.422 r_nbtor_refined 0.221 r_symmetry_nbd_other 0.17 r_nbd_refined 0.153 r_xyhbond_nbd_refined 0.119 r_metal_ion_refined 0.102 r_symmetry_nbtor_other 0.072 r_chiral_restr 0.048 r_symmetry_xyhbond_nbd_other 0.032 r_gen_planes_refined 0.01 r_bond_refined_d 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001
Sample DalDro bound to the terminating 70S E. coli ribosome
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 70345 Reported Resolution (Å) 3.11 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 1.14
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO MODEL REFINEMENT REFMAC 5.8.0431 RECONSTRUCTION RELION 5.0.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION