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Ribosome-dome complex including the Sec-translocon (SecYEG-SecA-SecDF) from antibiotics treated Mycoplasma pneumoniae cells (Combined)
Sample pooled Ribosome-Sec translocon-Dome supercomplexes from four antibiotic treated Mycoplasma pneumoniae datasets(chloramphenicol treated & on K2 camera; puseudoridimycin treated; spectinomycin treated; chloramphenicol treated & on K3 camera)
Specimen Preparation Sample Aggregation State CELL Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details Back-side blotting for 2-3 seconds before plunging using a manual plunger without an environmental control chamber.
3D Reconstruction Reconstruction Method SUBTOMOGRAM AVERAGING Number of Particles 2304 Reported Resolution (Å) 9.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 3.2 3.34
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 4000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version VOLUME SELECTION PyTom VOLUME SELECTION Warp 1.0.9 IMAGE ACQUISITION SerialEM CTF CORRECTION Warp 1.0.9 FINAL EULER ASSIGNMENT RELION 3.0.8 CLASSIFICATION RELION 3.0.8 RECONSTRUCTION RELION 3.0.8
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY